Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs28666958 chr16:1497125 A/G 1.18E-7 362 19.53 21.07 1.87 KM Plot
LIHC rs28754376 chr11:73500214 A/T 2.58E-6 364 19.27 21.2 1.87 KM Plot
LIHC rs2924344 chr11:119952304 G/A 1.02E-11 356 19.57 20.23 0.9 KM Plot
LIHC rs3081782 chr2:37108211 A/AAAAAC 1.3E-5 365 20.5 12.17 8.73 KM Plot
LIHC rs30953 chr16:55274710 A/G 2.97E-5 365 10.12 20.07 19.95 KM Plot
LIHC rs34277712 chr3:7914499 T/A 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs34330219 chr14:56017375 G/A 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs34582397 chr11:107161242 A/G 8.88E-6 365 19.87 18.5 1.87 KM Plot
LIHC rs34614589 chr14:56017503 CA/C 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs34631670 chr2:158950191 C/G 5.47E-6 361 21.03 13.6 9.07 KM Plot
LIHC rs35142541 chr5:145606270 T/A 3.2E-5 355 19.6 21.03 11.97 KM Plot
LIHC rs35269218 chr3:7940129 C/G 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs35294669 chr14:56017438 T/A 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs35308339 chr16:1498510 T/C 3.55E-7 367 19.33 22.33 1.87 KM Plot
LIHC rs35312435 chr2:158947330 G/T 5.7E-6 360 21.03 13.92 9.07 KM Plot